URL details: pysam.readthedocs.io/en/latest/usage.html#extending-pysam
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Working with BAM/CRAM/SAM-formatted files — pysam 0.20.0 documentation
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To begin with, import the pysam module and open a pysam.AlignmentFile : import pysam samfile = pysam . AlignmentFile ( "ex1.bam" , "rb" ) The above command opens the file ex1.bam for reading. The b qualifier indicates that this is a BAM file. To open a SAM
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